GeneAutomate | High-Throughput Inference

Interactive Analysis

Explore the Visualization

Click on the Demo button and Pipeline to experience the working.

Gene List A (ESTROGEN_RESPONSE_EARLY)

Gene List B (ESTROGEN_RESPONSE_LATE)

System Overview

About the WebTool

GeneAutomate compares and annotates biological narratives between gene lists. It calculates pathway enrichment significance via the Hypergeometric Survival Function, applies Benjamini-Hochberg (FDR) correction to eliminate false discoveries, and visualizes validated protein-protein interaction (PPI) cross-talk across gene lists.

Upcoming Features

• Multi-species support
• Download in SVG and TSV format
• Comparative visuals based on Reactome Pathways
• Protein interaction & binding prediction via ESM-2 & ARCHS4 Matrix
• GO Semantic Similarity profiling

1. Overlap Analysis (Set Theory)

Unique to Gene List A

Shared Terms

Unique to Gene List B

2. Dominant Biological Pathways

3. Pathway Enrichment Intensity

4. Gene-Concept Network (cnetplot)

5. PPI Cross-talk (Circular Network)

GeneAutomate^®

Explore the Visualization

Unique to Gene List A

Shared Terms

Unique to Gene List B

Internal (Gene List A)

Cross-talk

Internal (Gene List B)